SNP Profiles of MO 20   View Data

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 Key

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_Input profile
CTAACCTTCTACCTGTCTCTAAAGCTAA
1._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
2._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
3._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
4._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
5._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
6._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
7._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
8._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
9._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
10._MO_20
CTAACCTTCTACCTGTCTCTAAAGCTAA
11._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
12._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
13._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
14._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
15._GC-01-121-6-18
CTAACCTTCTACCTGTCTCTAAAGCTAA
16._GC-08-167-4-10
CTAACCTTCTACCTGTCTCTAAAGCTAA
17._GC-08-167-4-10
CTAACCTTCTACCTGTCTCTAAAGCTAA
18._GC-08-167-4-10
CTAACCTTCTACCTGTCTCTAAAGCTAA
19._GC-08-167-4-10
CTAACCTTCTACCTGTCTCTAAAGCTAA
20._RUQ_1566
__CC____GT_CT_AG_AA
21._MO_20
CTAACCTTCTACCTGTCTTTAAAGCTAA
22._RUQ_1566
_--TT___-____--
23._RUQ_1566
__GG_________CT_
24._MO_20
CCGGCGCCTT_TTTTCCCCAAGGCCGG
25._GC-01-121-6-18
CCGGCGCCTT_TTTTCCCCAAGGCCGG
26._MO_20
CCGGCCTTCCCCTTTTCTCCTTGGCCAA
27._MO_20_Fld#_171_Plt#_1
AGAAGGAAAGACAGAC__AAAGAGAA
28._RUQ_1566
AGAAGGAAAGACAGAC__AAAGAGAA
29._MITC-000675
AGAAGGAAAGACAGAC__AAAGAGAA
30._MO_20_Fld#_74_Plt#_1
AGAACCAGAAAAGGAA__AAAAAGAG
 1516171819202122232425262728
_Input profile
CTATCGCTCTCGGGTTCCCGGTCTACAG
1._GC-01-121-6-18
CTATCGCTCTCGGGTTCCCGGTCTACAG
2._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
3._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
4._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
5._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
6._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
7._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
8._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
9._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
10._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
11._GC-01-121-6-18
CTATCGCTCTCGGGTTCCCGGTCTACAG
12._GC-01-121-6-18
CTATCGCTCTCGGGTTCCCGGTCTACAG
13._GC-01-121-6-18
CTATCGCTCTCGGGTTCCCGGTCTACAG
14._GC-01-121-6-18
CTATCGCTCTCGGGTTCCCGGTCTACAG
15._GC-01-121-6-18
CTATCGCTCTCGGGTTCCCGGTCTACAG
16._GC-08-167-4-10
CTATCGCTCTCGGGTTCCCGGTCTACAG
17._GC-08-167-4-10
CTATCGCTCTCGGGTTCCCGGTCTACAG
18._GC-08-167-4-10
CTATCGCTCTCGGGTTCCCGGTCTACAG
19._GC-08-167-4-10
CTATCGCTCTCGGGTTCCCGGTCTACAG
20._RUQ_1566
_____CGGG_CCCG__AC_
21._MO_20
CTATCGCTCTCGGGTTCCCGGTCTACAG
22._RUQ_1566
____----CC-GG-ACGG
23._RUQ_1566
CT___CTCG__CCCG____
24._MO_20
CTAAGGCCCCGGGGCCACCCGGCCAAAG
25._GC-01-121-6-18
CTAAGGCCCCGGGGCCACCCGGCCAAAG
26._MO_20
TTTTGGTTTTCCGTCCCCGGGGCCAAGG
27._MO_20_Fld#_171_Plt#_1
AGATCGAGAGCGCCAACCCGAC_AC_
28._RUQ_1566
AGATCGAGAGCGCCAACCCGAC_AC_
29._MITC-000675
AGATCGAGAGCGCCAACCCGAC_AC_
30._MO_20_Fld#_74_Plt#_1
AAAAGGAAGGCCCCAACCCCAA_CC_
 2930313233343536373839   
_Input profile
GGAACTAGCCACCTGTACATCGX_XX_XX_X
1._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
2._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
3._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
4._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
5._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
6._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
7._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
8._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
9._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
10._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
11._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
12._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
13._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
14._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
15._GC-01-121-6-18
GGAACTAGCCACCTGTACATCGX_XX_XX_X
16._GC-08-167-4-10
GGAACTAGCCACCTGTACATCGX_XX_XX_X
17._GC-08-167-4-10
GGAACTAGCCACCTGTACATCGX_XX_XX_X
18._GC-08-167-4-10
GGAACTAGCCACCTGTACATCGX_XX_XX_X
19._GC-08-167-4-10
GGAACTAGCCACCTGTACATCGX_XX_XX_X
20._RUQ_1566
___AG____AC__X_XX_XX_X
21._MO_20
GGAACTAGCCACCTGTACATCGX_XX_XX_X
22._RUQ_1566
_---CC----__X_XX_XX_X
23._RUQ_1566
_AA_AGGGACCT_CC__X_XX_XX_X
24._MO_20
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
25._GC-01-121-6-18
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
26._MO_20
AGTTCCAACCCCTTGGCCAACCX_XX_XX_X
27._MO_20_Fld#_171_Plt#_1
GGAAAGAGGGACAGACACATCGX_XX_XX_X
28._RUQ_1566
GGAAAGAGGGACAGAC_ATCGX_XX_XX_X
29._MITC-000675
GGAAAGAGGGACAGAC_ATCGX_XX_XX_X
30._MO_20_Fld#_74_Plt#_1
GGATAGAAGGAAAGACCCATGGX_XX_XX_X

Input profile: MO_20

 
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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

1._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

4._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

5._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

6._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

7._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

8._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

9._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

10._MO_20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

11._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

12._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

13._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

15._MO_20 GC-01-121-6-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

16._MO_20 GC-08-167-4-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._MO_20 GC-08-167-4-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._MO_20 GC-08-167-4-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._MO_20 GC-08-167-4-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._MO_20 RUQ_1566

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._MO_20

98.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

22._MO_20 RUQ_1566

83.3 %
6 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._MO_20 RUQ_1566

80.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

24._MO_20

53.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

25._MO_20 GC-01-121-6-18

53.9 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._MO_20

52.6 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

27._MO_20 MO_20_Fld#_171_Plt#_1

51.4 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

28._MO_20 RUQ_1566

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

29._MO_20 MITC-000675

50 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

30._MO_20 MO_20_Fld#_74_Plt#_1

35.7 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25